STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3328PFAM: protein of unknown function DUF1465; KEGG: met:M446_4328 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Mnod_2822
PFAM: TadE family protein; KEGG: met:M446_2389 TadE family protein.
  
     0.760
Mnod_2561
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2386 peptidase A24A prepilin type IV.
  
     0.759
Mnod_2825
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2386 peptidase A24A prepilin type IV.
  
     0.759
Mnod_3791
PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV.
  
     0.755
Mnod_7566
KEGG: met:M446_6830 hypothetical protein.
  
     0.755
Mnod_4163
PFAM: type IV pilus assembly PilZ; KEGG: met:M446_4427 type IV pilus assembly PilZ.
  
     0.751
Mnod_5127
PFAM: type IV pilus assembly PilZ; KEGG: met:M446_3234 type IV pilus assembly PilZ.
  
     0.751
Mnod_2821
KEGG: met:M446_2390 hypothetical protein.
  
     0.747
Mnod_2823
KEGG: met:M446_2388 hypothetical protein.
  
     0.747
Mnod_2829
KEGG: met:M446_2382 response regulator receiver protein.
  
     0.740
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.