Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3331KEGG: met:M446_4325 hypothetical protein. (85 aa)    
Predicted Functional Partners:
Mnod_3332
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: met:M446_4324 cytochrome d ubiquinol oxidase, subunit II.
       0.773
Mnod_3333
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: met:M446_4323 cytochrome bd ubiquinol oxidase subunit I.
       0.768
Mnod_3330
KEGG: met:M446_4326 putative transcriptional regulator; Belongs to the GbsR family.
       0.737
Mnod_3329
KEGG: met:M446_4327 hypothetical protein.
       0.511
Mnod_3334
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: met:M446_4322 alcohol dehydrogenase.
       0.419
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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