Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3334PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: met:M446_4322 alcohol dehydrogenase. (324 aa)    
Predicted Functional Partners:
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.753
Mnod_4641
PFAM: MaoC domain protein dehydratase; KEGG: met:M446_2586 dehydratase.
 
 0.708
Mnod_4490
PFAM: aminoglycoside phosphotransferase; KEGG: met:M446_4558 aminoglycoside phosphotransferase.
 
   0.681
Mnod_4413
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: met:M446_3408 acyl-CoA dehydrogenase domain-containing protein.
 
   0.592
Mnod_3335
Hypothetical protein; KEGG: met:M446_4321 polysaccharide biosynthesis protein.
       0.559
Mnod_3330
KEGG: met:M446_4326 putative transcriptional regulator; Belongs to the GbsR family.
 
     0.486
Mnod_3332
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: met:M446_4324 cytochrome d ubiquinol oxidase, subunit II.
     
 0.448
Mnod_3333
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: met:M446_4323 cytochrome bd ubiquinol oxidase subunit I.
       0.421
Mnod_3331
KEGG: met:M446_4325 hypothetical protein.
       0.419
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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