STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3357Transcriptional regulator, PaaX family; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: smd:Smed_4146 transcriptional regulator, PaaX family. (301 aa)    
Predicted Functional Partners:
Mnod_3356
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pde:Pden_4810 phenylacetate-CoA oxygenase, PaaG subunit.
 
   
 0.783
Mnod_3354
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pde:Pden_4808 phenylacetate-CoA oxygenase, PaaI subunit.
 
   
 0.782
Mnod_3353
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: nha:Nham_0931 phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.763
Mnod_3355
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sme:SMb21639 putative phenylacetic acid degradation protein.
 
   
 0.691
Mnod_3351
PFAM: phenylacetic acid catabolic family protein; KEGG: pde:Pden_4805 phenylacetic acid catabolic family protein.
 
   
 0.664
Mnod_3366
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: xau:Xaut_0902 phenylacetic acid degradation protein PaaD.
 
   
 0.647
Mnod_3352
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pde:Pden_4806 phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
   
 0.642
Mnod_5525
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_0682 phenylacetic acid degradation protein PaaD.
 
   
 0.621
Mnod_7197
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpb:RPB_3639 phenylacetate-CoA oxygenase, PaaI subunit.
 
   
 0.604
cobB-2
PFAM: Silent information regulator protein Sir2; KEGG: met:M446_5854 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
   
    0.598
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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