Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3380PFAM: protein of unknown function DUF107; KEGG: bja:bll4952 nodulation efficiency protein D. (467 aa)    
Predicted Functional Partners:
Mnod_3381
PFAM: band 7 protein; KEGG: bja:bll4951 putative stomatin-like protein.
 
    0.969
Mnod_6549
PFAM: protein of unknown function DUF107; KEGG: xau:Xaut_1881 hypothetical protein.
  
  
 0.655
Mnod_2992
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bja:blr7331 hypothetical protein.
 
     0.556
Mnod_3384
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bja:blr7331 hypothetical protein.
 
     0.552
Mnod_6548
PFAM: band 7 protein; KEGG: mrd:Mrad2831_5109 band 7 protein.
 
    0.550
Mnod_0702
HflC protein; HflC and HflK could regulate a protease.
 
    0.519
Mnod_3379
PFAM: transposase IS4 family protein; KEGG: mex:Mext_3790 transposase IS4 family protein.
       0.505
Mnod_2322
PFAM: Erythromycin esterase; KEGG: met:M446_2872 erythromycin esterase.
  
  
 0.463
Mnod_6772
PFAM: GYD family protein; KEGG: met:M446_6926 GYD family protein.
  
     0.455
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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