STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3393TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: mrd:Mrad2831_2487 sarcosine oxidase beta subunit family protein. (417 aa)    
Predicted Functional Partners:
Mnod_3391
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mex:Mext_3738 sarcosine oxidase alpha subunit family protein.
 
 0.998
Mnod_3392
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: mrd:Mrad2831_2486 sarcosine oxidase delta subunit family protein.
 
 0.996
Mnod_3390
PFAM: Sarcosine oxidase gamma subunit; KEGG: mex:Mext_3739 sarcosine oxidase gamma subunit.
 
 0.995
Mnod_3398
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: mpo:Mpop_4001 NADH:flavin oxidoreductase/NADH oxidase.
 
 
 0.962
Mnod_3401
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mpo:Mpop_3998 electron transfer flavoprotein beta-subunit.
 
 
  0.957
Mnod_3399
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpo:Mpop_4000 protein of unknown function DUF224 cysteine-rich region domain protein.
  
 
  0.941
Mnod_2767
PFAM: aminotransferase class V; KEGG: met:M446_3486 serine--glyoxylate transaminase.
  
 
 0.930
Mnod_3400
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: mpo:Mpop_3999 electron transfer flavoprotein alpha subunit.
 
 
  0.930
Mnod_4911
PFAM: aminotransferase class V; KEGG: met:M446_4373 serine--glyoxylate transaminase.
  
 
 0.930
Mnod_7112
PFAM: aminotransferase class V; KEGG: met:M446_6552 serine--glyoxylate transaminase.
  
 
 0.930
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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