Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3402PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mex:Mext_3742 YbaK/prolyl-tRNA synthetase associated region. (175 aa)    
Predicted Functional Partners:
Mnod_3399
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: mpo:Mpop_4000 protein of unknown function DUF224 cysteine-rich region domain protein.
       0.751
Mnod_3400
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: mpo:Mpop_3999 electron transfer flavoprotein alpha subunit.
       0.751
Mnod_3401
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mpo:Mpop_3998 electron transfer flavoprotein beta-subunit.
       0.751
Mnod_3398
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: mpo:Mpop_4001 NADH:flavin oxidoreductase/NADH oxidase.
       0.594
Mnod_7078
PFAM: Ubiquinol-cytochrome C chaperone; KEGG: met:M446_6227 ubiquinol-cytochrome c chaperone.
  
     0.469
Mnod_3396
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mpo:Mpop_4003 Rieske (2Fe-2S) domain protein.
       0.466
Mnod_3397
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mex:Mext_3747 oxidoreductase FAD-binding subunit.
       0.466
Mnod_3403
PFAM: Formaldehyde-activating enzyme (Fae); KEGG: mpo:Mpop_3340 formaldehyde-activating enzyme (Fae).
       0.437
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 
 0.434
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.