STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3414PFAM: Xylose isomerase domain protein TIM barrel; KEGG: oan:Oant_4583 xylose isomerase domain protein TIM barrel. (286 aa)    
Predicted Functional Partners:
Mnod_3413
PFAM: regulatory protein TetR; KEGG: rpb:RPB_3117 transcriptional regulator, TetR family.
 
     0.848
Mnod_0648
PFAM: protein of unknown function DUF993; KEGG: azc:AZC_2347 hypothetical protein.
 
    0.801
Mnod_3415
PFAM: Hydantoinase B/oxoprolinase; KEGG: oan:Oant_4582 5-oxoprolinase (ATP-hydrolyzing).
     
 0.780
Mnod_3416
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: oan:Oant_4581 5-oxoprolinase (ATP-hydrolyzing).
       0.773
Mnod_3412
PFAM: class II aldolase/adducin family protein; KEGG: azc:AZC_2009 hypothetical protein.
     
 0.714
Mnod_3417
PFAM: NMT1/THI5 like domain protein; KEGG: oan:Oant_4578 NMT1/THI5 like domain protein.
       0.520
Mnod_3419
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_4580 binding-protein-dependent transport systems inner membrane component.
       0.519
Mnod_3418
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3092 ABC transporter related.
  
    0.511
Mnod_5601
PFAM: oxidoreductase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Oxidoreductase domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: ote:Oter_3247 oxidoreductase domain-containing protein.
  
  
 0.507
Mnod_4686
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_3263 mandelate racemase/muconate lactonizing protein.
  
     0.429
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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