STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3418PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3092 ABC transporter related. (284 aa)    
Predicted Functional Partners:
Mnod_3419
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_4580 binding-protein-dependent transport systems inner membrane component.
 
 
 0.970
Mnod_3417
PFAM: NMT1/THI5 like domain protein; KEGG: oan:Oant_4578 NMT1/THI5 like domain protein.
 
 
 0.909
Mnod_5146
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4508 binding-protein-dependent transport systems inner membrane component.
 
 
 0.870
Mnod_2985
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_0770 binding-protein-dependent transport systems inner membrane component.
 
 
 0.866
Mnod_4886
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3459 binding-protein-dependent transport systems inner membrane component.
 
 
 0.864
Mnod_4895
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_3457 binding-protein-dependent transport systems inner membrane component.
 
 
 0.863
Mnod_0326
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_2276 binding-protein-dependent transport systems inner membrane component.
 
 
 0.861
Mnod_2256
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1018 transmembrane permease ABC transporter protein.
 
 
 0.846
Mnod_2679
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_3451 ABC transporter related.
 
 
 0.828
Mnod_0055
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_0055 binding-protein-dependent transport systems inner membrane component.
 
 
 0.827
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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