Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3435Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase large chain; KEGG: met:M446_1732 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (428 aa)    
Predicted Functional Partners:
Mnod_3436
PFAM: type III effector Hrp-dependent outers; KEGG: met:M446_1733 type III effector Hrp-dependent outers.
 
   
 0.954
Mnod_2421
KEGG: xau:Xaut_2925 semialdehyde dehydrogenase NAD - binding.
 
   
 0.815
Mnod_2419
PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0094 type III effector Hrp-dependent outers.
 
   
 0.805
Mnod_0320
PFAM: phosphoribulokinase/uridine kinase; KEGG: met:M446_2281 phosphoribulokinase.
 
 
 0.787
Mnod_3434
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: met:M446_1731 short-chain dehydrogenase/reductase SDR.
       0.773
Mnod_3437
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_1734 short-chain dehydrogenase/reductase SDR.
       0.696
Mnod_0741
KEGG: met:M446_1749 carbonic anhydrase.
    
 
 0.658
Mnod_1635
PFAM: transferase hexapeptide repeat containing protein; KEGG: met:M446_0468 hexapaptide repeat-containing transferase.
    
 
 0.658
Mnod_3074
KEGG: smd:Smed_1693 transferase hexapeptide repeat containing protein.
    
 
 0.658
Mnod_3433
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: met:M446_1730 TRAP dicarboxylate transporter, DctP subunit.
       0.645
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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