STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_3490PFAM: Radical SAM domain protein; KEGG: met:M446_6115 radical SAM domain-containing protein. (346 aa)    
Predicted Functional Partners:
Mnod_3489
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; KEGG: ccr:CC_0705 hypothetical protein.
  
    0.812
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.781
Mnod_3289
PFAM: Radical SAM domain protein; KEGG: met:M446_4900 radical SAM domain-containing protein.
  
     0.697
pqqB
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.561
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.559
Mnod_3491
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_2458 methyltransferase type 11.
       0.552
Mnod_3492
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: mrd:Mrad2831_1496 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
  
    0.548
Mnod_3131
KEGG: mrd:Mrad2831_1391 hypothetical protein.
 
    0.525
Mnod_3495
KEGG: met:M446_6113 hypothetical protein.
  
    0.513
Mnod_2953
PFAM: Radical SAM domain protein; KEGG: npu:Npun_R3393 radical SAM domain-containing protein.
  
     0.510
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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