Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3491PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_2458 methyltransferase type 11. (273 aa)    
Predicted Functional Partners:
Mnod_0322
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_0628 methyltransferase type 11.
  
     0.553
Mnod_3490
PFAM: Radical SAM domain protein; KEGG: met:M446_6115 radical SAM domain-containing protein.
       0.552
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.546
Mnod_3489
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; KEGG: ccr:CC_0705 hypothetical protein.
       0.546
Mnod_3492
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: mrd:Mrad2831_1496 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
       0.480
Mnod_3493
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mrd:Mrad2831_1497 ABC transporter related.
       0.468
Mnod_3494
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_1498 binding-protein-dependent transport systems inner membrane component.
       0.468
Mnod_3495
KEGG: met:M446_6113 hypothetical protein.
       0.468
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.431
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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