STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3500PFAM: Integrase catalytic region; KEGG: mpo:Mpop_3817 integrase catalytic region. (265 aa)    
Predicted Functional Partners:
Mnod_4337
PFAM: transposase IS3/IS911 family protein; KEGG: mex:Mext_3530 transposase IS3/IS911 family protein.
 
   
 0.813
Mnod_6820
KEGG: mpo:Mpop_3816 transposase IS3/IS911 family protein.
 
   
 0.813
Mnod_6453
PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: nwi:Nwi_3112 helix-turn-helix, fis-type.
 
   
0.538
Mnod_6452
PFAM: transposase IS3/IS911 family protein; KEGG: nwi:Nwi_2864 transposase IS3/IS911.
 
   
 0.511
Mnod_5006
Transposase mutator type; Required for the transposition of the insertion element.
 
     0.452
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.