Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_3535PFAM: Lytic transglycosylase catalytic; KEGG: mpo:Mpop_5452 hypothetical protein. (1160 aa)    
Predicted Functional Partners:
Mnod_3527
PFAM: Fibronectin type III domain protein; KEGG: rso:RSc1698 bacteriophage protein.
  
   0.649
Mnod_3530
TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: pfl:PFL_3750 minor tail protein L.
  
   0.635
Mnod_3531
PFAM: minor tail family protein; KEGG: mes:Meso_1883 phage minor tail.
  
   0.633
Mnod_3528
PFAM: lambda tail assembly I; KEGG: rso:RSc1696 phage HK022 GP20-like protein.
  
   0.619
Mnod_0588
PFAM: GPW/gp25 family protein; KEGG: met:M446_4136 gpW/GP25 family protein.
  
   0.497
Mnod_3879
TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: bph:Bphy_3385 phage minor tail protein L.
  
   0.496
Mnod_4060
TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: pfl:PFL_3750 minor tail protein L.
  
   0.496
Mnod_5050
TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: bph:Bphy_3385 phage minor tail protein L.
  
   0.496
Mnod_5753
TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: pfl:PFL_3750 minor tail protein L.
  
   0.496
Mnod_6225
TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: bph:Bphy_3385 phage minor tail protein L.
  
   0.496
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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