STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_3576Putative phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: met:M446_4082 putative phage repressor. (220 aa)    
Predicted Functional Partners:
Mnod_3575
Transcriptional regulator, XRE family; KEGG: pla:Plav_1454 alpha-ketoglutarate decarboxylase.
       0.551
Mnod_1557
PFAM: helix-turn-helix domain protein; KEGG: met:M446_0615 XRE family transcriptional regulator.
  
     0.483
Mnod_5694
KEGG: met:M446_1545 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.475
Mnod_3577
KEGG: xau:Xaut_3611 hypothetical protein.
       0.461
Mnod_4888
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xau:Xaut_3457 TPR repeat-containing protein.
  
     0.432
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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