Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3586KEGG: mes:Meso_1187 hypothetical protein. (303 aa)    
Predicted Functional Partners:
Mnod_3585
Hypothetical protein; KEGG: nar:Saro_2700 phage-related protein endonuclease-like.
  
  
 0.818
Mnod_3583
SMART: HNH nuclease; KEGG: rpi:Rpic_2339 HNH endonuclease.
       0.776
Mnod_3578
KEGG: met:M446_4080 hypothetical protein.
       0.773
Mnod_3579
Hypothetical protein.
       0.773
Mnod_3580
Hypothetical protein.
       0.773
Mnod_3581
Hypothetical protein.
       0.773
Mnod_3582
KEGG: mpt:Mpe_B0329 type I restriction-modification system methyltransferase subunit-like protein.
       0.773
Mnod_3584
KEGG: met:M446_4078 hypothetical protein.
       0.773
Mnod_3587
Hypothetical protein.
       0.773
Mnod_3591
KEGG: oan:Oant_2327 hypothetical protein.
       0.766
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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