Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3594PFAM: C-5 cytosine-specific DNA methylase; KEGG: ppu:PP_1541 methyltransferase, putative. (380 aa)    
Predicted Functional Partners:
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.914
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
 0.904
Mnod_0941
PFAM: autoinducer synthesis protein; KEGG: bbt:BBta_p0259 autoinducer synthesis protein TraI (conjugation factor synthetase).
     
 0.900
Mnod_3583
SMART: HNH nuclease; KEGG: rpi:Rpic_2339 HNH endonuclease.
 
    0.794
Mnod_3591
KEGG: oan:Oant_2327 hypothetical protein.
       0.781
Mnod_3588
Hypothetical protein.
       0.773
Mnod_3589
Hypothetical protein.
       0.773
Mnod_3590
KEGG: mpo:Mpop_2742 hypothetical protein.
       0.773
Mnod_3592
KEGG: spe:Spro_4940 hypothetical protein.
       0.773
Mnod_3593
Hypothetical protein.
       0.773
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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