Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3617KEGG: met:M446_3951 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Mnod_3616
KEGG: met:M446_3952 hypothetical protein.
       0.728
Mnod_3618
PFAM: alpha/beta hydrolase fold; KEGG: met:M446_3950 alpha/beta hydrolase fold.
       0.530
Mnod_7582
KEGG: met:M446_6846 hypothetical protein.
 
     0.521
Mnod_0718
KEGG: met:M446_1117 hypothetical protein.
  
     0.510
Mnod_6363
PFAM: AsmA family protein; KEGG: met:M446_5855 AsmA family protein.
 
     0.501
Mnod_1840
KEGG: met:M446_4884 hypothetical protein.
  
     0.488
Mnod_4722
KEGG: met:M446_4209 hypothetical protein.
  
     0.487
Mnod_1390
SMART: WD-40 repeat protein; KEGG: met:M446_0862 WD-40 repeat-containing protein.
 
     0.477
Mnod_1343
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: met:M446_0900 endonuclease/exonuclease/phosphatase.
  
  
 0.467
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.436
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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