Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3623KEGG: met:M446_3944 extracellular solute-binding protein. (272 aa)    
Predicted Functional Partners:
Mnod_3625
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_3942 binding-protein-dependent transport systems inner membrane component.
 
  
 0.994
Mnod_3624
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3943 ABC transporter related.
 
  
 0.984
Mnod_1400
PFAM: regulatory protein LysR; KEGG: met:M446_0839 molybdate metabolism transcriptional regulator.
 
     0.816
Mnod_5279
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3088 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
   
 0.784
Mnod_5278
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: met:M446_3087 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.776
Mnod_5276
PFAM: cytoplasmic chaperone TorD family protein; KEGG: met:M446_3085 cytoplasmic chaperone TorD family protein.
 
     0.774
Mnod_5270
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3079 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.760
Mnod_5280
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: met:M446_3089 formate dehydrogenase, gamma subunit.
 
     0.753
Mnod_5226
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: met:M446_3266 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.738
Mnod_5227
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: met:M446_3267 respiratory-chain NADH dehydrogenase domain-containing protein.
 
     0.695
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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