Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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Score
Mnod_3652Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_2975 LysR family transcriptional regulator. (301 aa)    
Predicted Functional Partners:
Mnod_3653
PFAM: extracellular solute-binding protein family 5; KEGG: met:M446_2974 extracellular solute-binding protein.
 
     0.752
Mnod_5250
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_3286 LysR family transcriptional regulator.
  
     0.744
Mnod_3656
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: met:M446_2971 peptidase M20.
 
     0.728
Mnod_5286
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_3094 LysR family transcriptional regulator.
  
     0.683
Mnod_2979
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001283 probable transcriptional regulator protein, LysR family.
  
     0.673
Mnod_7619
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1079 transcriptional regulator.
  
     0.672
Mnod_2713
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1079 transcriptional regulator.
  
     0.671
Mnod_3431
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_1729 LysR family transcriptional regulator.
  
     0.670
Mnod_3654
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_2973 binding-protein-dependent transport systems inner membrane component.
       0.640
Mnod_3454
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc01817 putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.629
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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