Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3690TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: met:M446_5611 CitMHS family citrate/H+ symporter. (438 aa)    
Predicted Functional Partners:
Mnod_3689
PFAM: protein of unknown function DUF1446; KEGG: mrd:Mrad2831_4048 hypothetical protein.
 
     0.957
Mnod_3688
KEGG: met:M446_5609 hypothetical protein.
 
     0.955
Mnod_3691
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_5612 LysR family transcriptional regulator.
 
    0.739
Mnod_3149
TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: met:M446_6859 malonate transporter, MadM subunit.
  
   
 0.603
Mnod_3150
TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: met:M446_6858 malonate transporter, MadL subunit.
  
     0.595
Mnod_4942
PFAM: Integral membrane protein TerC; KEGG: met:M446_2551 integral membrane protein TerC.
  
  
 0.543
Mnod_5500
KEGG: mrd:Mrad2831_4828 hypothetical protein.
  
     0.503
Mnod_3147
PFAM: short chain fatty acid transporter; KEGG: met:M446_4736 short chain fatty acid transporter.
  
     0.418
Mnod_3687
KEGG: met:M446_1875 hypothetical protein.
       0.413
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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