STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3700PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_4647 short-chain dehydrogenase/reductase SDR. (255 aa)    
Predicted Functional Partners:
Mnod_3699
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: met:M446_4646 GntR family transcriptional regulator.
 
     0.874
Mnod_3698
PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_4645 extracellular ligand-binding receptor.
 
 
   0.726
Mnod_3695
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: met:M446_4642 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
 
   0.648
Mnod_3694
PFAM: protein of unknown function DUF849; KEGG: met:M446_4641 hypothetical protein.
 
    0.635
Mnod_1942
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_0320 short-chain dehydrogenase/reductase SDR.
  
   0.622
Mnod_3696
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_4643 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.606
Mnod_1035
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpo:Mpop_0718 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.538
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.510
Mnod_3697
PFAM: inner-membrane translocator; KEGG: met:M446_4644 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.491
Mnod_3359
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: xau:Xaut_0907 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.
  
 0.422
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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