Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_3709KEGG: met:M446_3482 hypothetical protein. (317 aa)    
Predicted Functional Partners:
Mnod_0573
KEGG: met:M446_4127 TP901 family phage tail tape measure protein.
  
     0.722
Mnod_4350
PFAM: integrase family protein; KEGG: rpa:RPA4549 phage integrase.
  
     0.635
Mnod_2402
PFAM: regulatory protein TetR; KEGG: pfl:PFL_5953 transcriptional repressor PhlF.
  
     0.583
Mnod_2791
KEGG: met:M446_3202 hypothetical protein.
  
     0.571
Mnod_3145
PFAM: protein of unknown function DUF1275; KEGG: bra:BRADO5122 hypothetical protein.
  
     0.521
Mnod_3693
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: met:M446_1272 type III restriction protein res subunit.
  
     0.451
Mnod_3831
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: mlo:mll8500 repressor protein C; Belongs to the peptidase S24 family.
  
     0.427
Mnod_6867
PFAM: polysaccharide biosynthesis protein; KEGG: rle:pRL110396 putative transmembrane protein.
  
     0.426
Mnod_0863
PFAM: glycoside hydrolase family 16; KEGG: bbt:BBta_1039 hypothetical protein.
  
     0.420
Mnod_0570
PFAM: late control D family protein; KEGG: met:M446_4124 late control D family protein.
  
     0.407
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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