Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3716KEGG: met:M446_2655 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Mnod_3714
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: met:M446_2653 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.663
Mnod_3715
TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: met:M446_2654 molybdopterin converting factor, subunit 1.
       0.663
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.530
Mnod_7067
PFAM: SpoVR family protein; KEGG: met:M446_6238 SpoVR family protein.
   
    0.507
Mnod_3253
KEGG: mxa:MXAN_2847 hypothetical protein.
  
     0.499
Mnod_3712
PFAM: protein of unknown function UPF0057; KEGG: met:M446_2651 hypothetical protein.
       0.403
Mnod_3717
KEGG: met:M446_6452 putative sulfite:cytochrome c oxidoreductase subunit B.
       0.403
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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