Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3781KEGG: rpc:RPC_3708 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Mnod_2561
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2386 peptidase A24A prepilin type IV.
 
  
 0.872
Mnod_2825
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2386 peptidase A24A prepilin type IV.
 
  
 0.872
Mnod_2829
KEGG: met:M446_2382 response regulator receiver protein.
 
  
 0.871
Mnod_3791
PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV.
 
  
 0.868
Mnod_3789
KEGG: pla:Plav_0235 response regulator receiver protein.
 
  
 0.860
Mnod_2821
KEGG: met:M446_2390 hypothetical protein.
 
  
 0.813
Mnod_6795
PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_6390 TPR repeat-containing protein.
 
 
 0.813
Mnod_2822
PFAM: TadE family protein; KEGG: met:M446_2389 TadE family protein.
 
  
 0.806
Mnod_4163
PFAM: type IV pilus assembly PilZ; KEGG: met:M446_4427 type IV pilus assembly PilZ.
  
     0.771
Mnod_5127
PFAM: type IV pilus assembly PilZ; KEGG: met:M446_3234 type IV pilus assembly PilZ.
  
     0.770
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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