STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3786PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr3502 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Mnod_3785
KEGG: bbt:BBta_1520 hypothetical protein.
       0.773
Mnod_2566
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: mlo:mll6480 pilus assembly protein.
 
  
 0.576
Mnod_2567
PFAM: type II and III secretion system protein; transport-associated; KEGG: bja:blr3500 hypothetical protein; Belongs to the bacterial secretin family.
 
 
 0.568
Mnod_2568
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: mlo:mll0896 septum site-determining protein.
 
  
 0.549
Mnod_2573
PFAM: TadE family protein; KEGG: mlo:mll6477 hypothetical protein.
 
  
 0.519
Mnod_6504
TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: met:M446_5887 protease Do; Belongs to the peptidase S1C family.
  
 
 0.474
Mnod_3499
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mlo:mll2209 hypothetical protein.
 
 
 0.461
Mnod_2571
PFAM: type II secretion system protein; KEGG: ret:RHE_PE00315 putative TadC pilus assembly protein.
 
  
 0.447
Mnod_4733
TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: met:M446_4223 carboxyl-terminal protease; Belongs to the peptidase S41A family.
  
 
 0.447
Mnod_1307
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_0921 adenylate/guanylate cyclase.
  
  
 0.437
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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