Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3789KEGG: pla:Plav_0235 response regulator receiver protein. (423 aa)    
Predicted Functional Partners:
Mnod_3790
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sme:SMa1576 cpaB2 pilus assembly protein.
 
  
 0.964
Mnod_3791
PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV.
 
  
 0.929
Mnod_2831
PFAM: type II secretion system protein; KEGG: met:M446_2380 type II secretion system protein.
 
  
 0.927
Mnod_3794
PFAM: type II secretion system protein; KEGG: sme:SMa1564 pilus assembly protein.
 
  
 0.926
Mnod_2826
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: met:M446_2385 Flp pilus assembly protein CpaB.
 
  
 0.923
Mnod_2827
PFAM: type II and III secretion system protein; transport-associated; KEGG: met:M446_2384 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.918
Mnod_3792
PFAM: Flp/Fap pilin component; KEGG: sme:SMa1570 PilA2 pilus assembly protein.
 
  
 0.917
Mnod_2822
PFAM: TadE family protein; KEGG: met:M446_2389 TadE family protein.
 
  
 0.900
Mnod_2832
PFAM: type II secretion system protein; KEGG: met:M446_2379 type II secretion system protein.
 
  
 0.896
Mnod_3795
PFAM: type II secretion system protein; KEGG: smd:Smed_5120 type II secretion system protein.
 
  
 0.896
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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