Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3795PFAM: type II secretion system protein; KEGG: smd:Smed_5120 type II secretion system protein. (321 aa)    
Predicted Functional Partners:
Mnod_3794
PFAM: type II secretion system protein; KEGG: sme:SMa1564 pilus assembly protein.
 
  
 0.987
Mnod_3793
PFAM: type II secretion system protein E; KEGG: bja:bll1436 pilus assembly protein.
 
  
 0.960
Mnod_2831
PFAM: type II secretion system protein; KEGG: met:M446_2380 type II secretion system protein.
 
  
 0.948
Mnod_2570
PFAM: type II secretion system protein; KEGG: mlo:mlr6484 hypothetical protein.
 
  
 0.947
Mnod_2826
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: met:M446_2385 Flp pilus assembly protein CpaB.
 
  
 0.915
Mnod_3790
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sme:SMa1576 cpaB2 pilus assembly protein.
 
  
 0.915
Mnod_2566
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: mlo:mll6480 pilus assembly protein.
 
  
 0.914
Mnod_3789
KEGG: pla:Plav_0235 response regulator receiver protein.
 
  
 0.896
Mnod_2829
KEGG: met:M446_2382 response regulator receiver protein.
 
  
 0.895
Mnod_2568
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: mlo:mll0896 septum site-determining protein.
 
  
 0.890
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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