Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_3823KEGG: mrd:Mrad2831_5740 phage-type endonuclease. (211 aa)    
Predicted Functional Partners:
Mnod_3824
PFAM: ERF family protein; KEGG: xau:Xaut_3683 ERF family protein.
 
     0.888
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.724
Mnod_3825
KEGG: met:M446_4077 hypothetical protein.
       0.714
Mnod_3826
Hypothetical protein.
       0.714
Mnod_3827
Hypothetical protein.
       0.714
Mnod_3828
Hypothetical protein.
       0.714
Mnod_3829
KEGG: met:M446_4079 hypothetical protein.
       0.709
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.686
Mnod_3819
KEGG: mpo:Mpop_2742 hypothetical protein.
  
    0.482
Mnod_3818
KEGG: met:M446_4073 hypothetical protein.
       0.478
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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