Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3835KEGG: mlo:mlr7987 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Mnod_3836
Hypothetical protein.
       0.773
Mnod_3837
PFAM: VRR-NUC domain protein; KEGG: ppf:Pput_4127 VRR-NUC domain-containing protein.
       0.773
Mnod_3838
Hypothetical protein.
       0.773
Mnod_3839
PFAM: MT-A70 family protein; KEGG: met:M446_4092 MT-A70 family protein; Belongs to the MT-A70-like family.
       0.773
Mnod_3840
KEGG: met:M446_4093 hypothetical protein.
       0.773
Mnod_3841
Putative deoxyribonuclease; KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease.
       0.773
Mnod_3842
Hypothetical protein.
       0.773
Mnod_3843
KEGG: gdi:GDI3661 hypothetical protein.
       0.773
Mnod_3844
Hypothetical protein.
       0.773
Mnod_3845
PFAM: ROSMUCR transcriptional regulator; KEGG: met:M446_6603 MucR family transcriptional regulator.
       0.457
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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