STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3955PFAM: FAD dependent oxidoreductase; KEGG: met:M446_3847 FAD dependent oxidoreductase. (411 aa)    
Predicted Functional Partners:
Mnod_3391
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mex:Mext_3738 sarcosine oxidase alpha subunit family protein.
  
 
 0.875
Mnod_3975
PFAM: proline racemase; KEGG: met:M446_3837 proline racemase; Belongs to the proline racemase family.
 
   
 0.709
Mnod_3966
PFAM: proline racemase; KEGG: met:M446_3837 proline racemase; Belongs to the proline racemase family.
 
   
 0.702
Mnod_3392
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: mrd:Mrad2831_2486 sarcosine oxidase delta subunit family protein.
  
 
 0.545
Mnod_3956
PFAM: Aldehyde Dehydrogenase; KEGG: met:M446_3846 aldehyde dehydrogenase.
  
  
 0.511
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.459
Mnod_6035
TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: met:M446_3526 glycine cleavage system T protein.
  
 
 0.447
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.410
Mnod_3957
PFAM: dihydrodipicolinate synthetase; KEGG: met:M446_3845 dihydrodipicolinate synthetase.
 
     0.404
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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