Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3979PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_0899 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)    
Predicted Functional Partners:
Mnod_3980
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rsq:Rsph17025_3940 hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.794
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.510
Mnod_3981
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_2655 major facilitator transporter.
       0.476
Mnod_0636
KEGG: cyt:cce_5237 hypothetical protein.
  
 0.435
Mnod_3359
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: xau:Xaut_0907 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.
  
 0.422
Mnod_5970
PFAM: MaoC domain protein dehydratase; KEGG: met:M446_5194 dehydratase.
 
 0.410
Mnod_0292
PFAM: MaoC domain protein dehydratase; KEGG: met:M446_2315 dehydratase.
 
  0.409
Mnod_1942
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_0320 short-chain dehydrogenase/reductase SDR.
  
   0.405
Mnod_7569
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: met:M446_6833 enoyl-CoA hydratase/isomerase.
  
  0.403
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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