Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_3998PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: kcr:Kcr_0796 ornithine cyclodeaminase. (321 aa)    
Predicted Functional Partners:
Mnod_1215
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: met:M446_1825 arginase; Belongs to the arginase family.
 
  
 0.655
Mnod_3966
PFAM: proline racemase; KEGG: met:M446_3837 proline racemase; Belongs to the proline racemase family.
 
   
 0.574
Mnod_3975
PFAM: proline racemase; KEGG: met:M446_3837 proline racemase; Belongs to the proline racemase family.
 
   
 0.565
Mnod_3999
KEGG: met:M446_3845 dihydrodipicolinate synthetase.
     
 0.550
Mnod_3970
PFAM: FAD dependent oxidoreductase; KEGG: met:M446_3847 FAD dependent oxidoreductase.
 
  
 0.405
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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