Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4007PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: met:M446_3600 LRV Fes4 cluster domain-containing protein. (211 aa)    
Predicted Functional Partners:
Mnod_4010
TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: met:M446_3598 nitrogen fixation protein FixT.
 
    0.918
Mnod_4009
PFAM: NifZ family protein; KEGG: met:M446_3599 NifZ family protein.
 
    0.913
Mnod_4006
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3601 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
    0.912
Mnod_4005
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: met:M446_3602 nitrogenase cofactor biosynthesis protein NifB.
 
    0.904
Mnod_3989
TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF683; KEGG: met:M446_3542 ferredoxin III, nif-specific.
 
    0.828
Mnod_3990
TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: met:M446_3540 nitrogen fixation protein.
 
    0.795
Mnod_3991
TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: met:M446_3539 nitrogen fixation protein NifX.
 
    0.788
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
  
    0.784
Mnod_4012
Ferredoxin-like protein; Could be a 3Fe-4S cluster-containing protein.
  
    0.777
Mnod_3993
TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; KEGG: met:M446_3537 nitrogenase MoFe cofactor biosynthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.771
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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