STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4022PFAM: Integrase catalytic region; KEGG: bxe:Bxe_C0793 putative integrase. (330 aa)    
Predicted Functional Partners:
Mnod_5016
Hypothetical protein; KEGG: mex:Mext_0481 integrase catalytic region.
  
     0.696
Mnod_4023
Hypothetical protein; KEGG: ana:all8065 transposase.
       0.516
Mnod_4799
PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase.
 
     0.473
Mnod_0336
PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase.
 
     0.469
Mnod_6453
PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: nwi:Nwi_3112 helix-turn-helix, fis-type.
 
     0.439
Mnod_0129
PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase.
 
     0.419
Mnod_1525
PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase.
 
     0.419
Mnod_7250
PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase.
 
     0.419
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.