Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4075KEGG: oan:Oant_0244 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Mnod_4074
KEGG: mxa:MXAN_1217 hypothetical protein.
       0.773
Mnod_4071
KEGG: bra:BRADO3637 hypothetical protein.
       0.718
Mnod_4072
KEGG: bra:BRADO3636 hypothetical protein.
       0.718
Mnod_4073
KEGG: mlo:mlr8530 hypothetical protein.
       0.718
Mnod_1321
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_5752 TonB-dependent receptor.
    
   0.670
Mnod_4070
KEGG: mlo:mlr8533 hypothetical protein.
     
 0.659
Mnod_4068
Hypothetical protein.
       0.629
Mnod_4069
Hypothetical protein.
       0.629
Mnod_4076
KEGG: LOC686639; hypothetical protein LOC686639.
       0.472
Mnod_6504
TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: met:M446_5887 protease Do; Belongs to the peptidase S1C family.
  
 
 0.457
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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