Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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Co-expression
Experiments
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[Homology]
Score
Mnod_4080PFAM: peptidase U35 phage prohead HK97; KEGG: ppf:Pput_4115 peptidase U35, phage prohead HK97. (659 aa)    
Predicted Functional Partners:
Mnod_4081
PFAM: Terminase; KEGG: oan:Oant_0238 phage terminase.
 
     0.928
Mnod_4078
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.909
Mnod_5065
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.780
Mnod_2611
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.779
Mnod_4284
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.779
Mnod_5602
KEGG: rpe:RPE_3499 hypothetical protein.
  
     0.767
Mnod_5068
PFAM: Terminase; KEGG: oan:Oant_0238 phage terminase.
 
     0.753
Mnod_5601
PFAM: oxidoreductase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Oxidoreductase domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: ote:Oter_3247 oxidoreductase domain-containing protein.
  
     0.751
Mnod_4234
KEGG: rsh:Rsph17029_0667 hypothetical protein.
  
     0.725
Mnod_4082
KEGG: mex:Mext_3538 hypothetical protein.
       0.698
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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