Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4092KEGG: smd:Smed_1911 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Mnod_4088
PFAM: protein of unknown function DUF927; Bifunctional DNA primase/polymerase; KEGG: swi:Swit_2196 P4 family phage/plasmid primase.
       0.773
Mnod_4089
Putative deoxyribonuclease; KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease.
       0.773
Mnod_4090
Hypothetical protein.
       0.773
Mnod_4091
Hypothetical protein.
       0.773
Mnod_4093
Hypothetical protein.
       0.773
Mnod_4094
PFAM: VRR-NUC domain protein; KEGG: rpt:Rpal_2313 VRR-NUC domain protein.
       0.773
Mnod_4095
Hypothetical protein.
       0.773
Mnod_4096
Hypothetical protein.
       0.537
Mnod_3831
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: mlo:mll8500 repressor protein C; Belongs to the peptidase S24 family.
  
    0.502
Mnod_5872
TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: met:M446_5376 plasmid partitioning protein RepB; Belongs to the ParB family.
 
     0.414
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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