Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4115PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: pde:Pden_0261 D12 class N6 adenine-specific DNA methyltransferase. (530 aa)    
Predicted Functional Partners:
Mnod_2646
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: pde:Pden_0261 D12 class N6 adenine-specific DNA methyltransferase.
  
  
 
0.904
Mnod_5102
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: pde:Pden_0261 D12 class N6 adenine-specific DNA methyltransferase.
  
  
 
0.900
Mnod_4114
KEGG: met:M446_6937 hypothetical protein.
       0.549
Mnod_0878
PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: mex:Mext_0806 DNA methylase N-4/N-6 domain-containing protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.502
Mnod_0588
PFAM: GPW/gp25 family protein; KEGG: met:M446_4136 gpW/GP25 family protein.
 
    0.483
Mnod_2617
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
     0.460
Mnod_4278
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
     0.460
Mnod_1992
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
     0.455
Mnod_2459
KEGG: rsp:RSP_2757 hypothetical protein.
 
    0.444
Mnod_2614
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
     0.429
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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