Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4122Hypothetical protein. (53 aa)    
Predicted Functional Partners:
Mnod_4118
Hypothetical protein.
       0.590
Mnod_4119
Hypothetical protein.
       0.590
Mnod_4120
Hypothetical protein.
       0.590
Mnod_4121
Hypothetical protein.
      
0.590
Mnod_4116
KEGG: bvu:BVU_0933 hypothetical protein.
       0.560
Mnod_4117
KEGG: met:M446_4067 hypothetical protein.
       0.560
Mnod_4124
PFAM: integrase family protein; KEGG: oan:Oant_0203 phage integrase family protein.
       0.437
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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