Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4155PFAM: restriction endonuclease; KEGG: met:M446_4420 restriction endonuclease. (247 aa)    
Predicted Functional Partners:
Mnod_4156
PFAM: protein of unknown function DUF1194; KEGG: met:M446_4421 hypothetical protein.
       0.523
Mnod_0494
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: met:M446_1684 endonuclease/exonuclease/phosphatase.
  
     0.510
Mnod_5195
KEGG: met:M446_4457 hypothetical protein.
  
     0.509
Mnod_4360
KEGG: mex:Mext_4583 polysaccharide biosynthesis protein.
  
     0.477
Mnod_3740
Cellulose synthase subunit B; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
     0.476
Mnod_3738
KEGG: mpo:Mpop_1315 hypothetical protein.
  
     0.474
Mnod_4881
PFAM: Collagen triple helix repeat; KEGG: met:M446_3487 triple helix repeat-containing collagen.
  
     0.445
Mnod_1177
PFAM: Cupin 2 conserved barrel domain protein; KEGG: met:M446_1804 cupin 2 domain-containing protein.
  
     0.435
Mnod_0156
KEGG: met:M446_4603 hypothetical protein.
  
     0.429
Mnod_3737
KEGG: mpo:Mpop_1316 hypothetical protein.
  
     0.428
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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