Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_4156PFAM: protein of unknown function DUF1194; KEGG: met:M446_4421 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Mnod_1756
PFAM: molybdopterin binding domain; KEGG: met:M446_5449 molybdopterin binding domain-containing protein.
  
     0.636
Mnod_0351
KEGG: met:M446_2258 hypothetical protein.
  
     0.619
Mnod_4374
KEGG: met:M446_2754 hypothetical protein.
  
     0.567
Mnod_4155
PFAM: restriction endonuclease; KEGG: met:M446_4420 restriction endonuclease.
       0.523
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: met:M446_5318 phenylalanyl-tRNA synthetase, beta subunit.
       0.430
Mnod_0517
KEGG: met:M446_2034 hypothetical protein.
  
     0.427
Mnod_1753
PFAM: VWA containing CoxE family protein; KEGG: met:M446_5446 VWA containing CoxE family protein.
  
     0.421
Mnod_1946
PFAM: regulatory protein AsnC/Lrp family; KEGG: met:M446_0316 AsnC family transcriptional regulator.
  
   
 0.420
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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