STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4190PFAM: protein of unknown function DUF466; KEGG: met:M446_2943 hypothetical protein. (74 aa)    
Predicted Functional Partners:
Mnod_4191
PFAM: carbon starvation protein CstA; KEGG: met:M446_2942 carbon starvation protein CstA.
 
  
 0.990
Mnod_2224
KEGG: met:M446_6153 hypothetical protein.
 
     0.548
Mnod_0074
KEGG: met:M446_6153 hypothetical protein.
  
     0.546
Mnod_4192
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: met:M446_2941 two component LuxR family transcriptional regulator.
       0.488
Mnod_1091
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: met:M446_2119 cobalamin synthesis protein P47K.
  
  
 0.463
Mnod_1318
PFAM: cobalamin synthesis protein P47K; KEGG: mex:Mext_2707 cobalamin synthesis protein P47K.
  
  
 0.463
Mnod_2148
TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: met:M446_2436 cobalamin biosynthesis protein CobW.
  
  
 0.463
Mnod_4494
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: met:M446_4562 cobalamin synthesis protein P47K.
  
  
 0.463
Mnod_5439
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: met:M446_0231 cobalamin synthesis protein P47K.
  
  
 0.463
Mnod_5733
KEGG: pde:Pden_1338 cobalamin synthesis protein, P47K.
  
  
 0.463
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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