Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4281PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase. (606 aa)    
Predicted Functional Partners:
Mnod_4278
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.913
Mnod_4284
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.905
Mnod_4282
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
 
     0.878
Mnod_1992
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.841
Mnod_2617
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.837
Mnod_4280
Hypothetical protein; KEGG: nha:Nham_2021 phage terminase, small subunit, putative, P27.
  
    0.811
Mnod_1996
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: det:DET1087 HK97 family portal protein, putative.
 
   
 0.789
Mnod_7331
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: dvu:DVU1502 HK97 family portal protein.
 
   
 0.789
Mnod_4078
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.788
Mnod_5065
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.788
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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