Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_4284TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein. (454 aa)    
Predicted Functional Partners:
Mnod_4282
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
 
   
 0.908
Mnod_4281
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
   
 0.905
Mnod_7329
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: pmy:Pmen_3970 HK97 family phage major capsid protein.
 
 
 0.869
Mnod_4286
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bps:BPSL1139 hypothetical protein.
  
   0.858
Mnod_1998
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97.
 
 
 0.839
Mnod_4287
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: smd:Smed_1327 phage head-tail adaptor, putative.
  
 
 0.823
Mnod_4278
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.807
Mnod_4285
PFAM: Collagen triple helix repeat; KEGG: hypothetical protein; K06237 collagen, type IV, alpha.
 
     0.804
Mnod_1994
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
   
 0.787
Mnod_2614
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
   
 0.787
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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