Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4289KEGG: pde:Pden_0996 gene transfer agent. (132 aa)    
Predicted Functional Partners:
Mnod_4290
KEGG: met:M446_5966 hypothetical protein.
   
   0.829
Mnod_4288
TIGRFAM: phage protein, HK97 gp10 family; KEGG: smd:Smed_1326 phage protein, HK97 GP10 family.
       0.789
Mnod_4287
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: smd:Smed_1327 phage head-tail adaptor, putative.
   
   0.721
Mnod_4291
KEGG: pde:Pden_0999 hypothetical protein.
       0.715
Mnod_4293
PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein.
  
   0.658
Mnod_4286
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bps:BPSL1139 hypothetical protein.
   
   0.633
Mnod_4284
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
   
   0.613
Mnod_4294
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
   
   0.596
Mnod_4297
KEGG: mpo:Mpop_1413 hypothetical protein.
   
   0.533
Mnod_4296
KEGG: met:M446_5975 gene transfer agent (GTA) like protein.
   
   0.524
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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