STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4328Conserved hypothetical protein; KEGG: LOC662112; similar to CG8890-PA; K01711 GDPmannose 4,6-dehydratase. (65 aa)    
Predicted Functional Partners:
Mnod_5211
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: met:M446_2955 undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.875
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
 
 0.839
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
     0.770
Mnod_1642
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: met:M446_0455 polysaccharide biosynthesis protein CapD.
  
  
 0.627
Mnod_4310
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: mex:Mext_3715 polysaccharide biosynthesis protein CapD.
  
  
 0.627
Mnod_0857
PFAM: sugar transferase; KEGG: mpo:Mpop_3531 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.475
Mnod_0872
PFAM: sugar transferase; KEGG: mpo:Mpop_3531 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.475
Mnod_2163
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: met:M446_2459 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.475
Mnod_3173
PFAM: sugar transferase; KEGG: met:M446_4032 sugar transferase.
  
  
 0.475
Mnod_5612
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mex:Mext_4130 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.475
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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