STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_4350PFAM: integrase family protein; KEGG: rpa:RPA4549 phage integrase. (452 aa)    
Predicted Functional Partners:
Mnod_0573
KEGG: met:M446_4127 TP901 family phage tail tape measure protein.
  
  
 0.792
Mnod_3709
KEGG: met:M446_3482 hypothetical protein.
  
     0.635
Mnod_3693
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: met:M446_1272 type III restriction protein res subunit.
  
    0.598
Mnod_2459
KEGG: rsp:RSP_2757 hypothetical protein.
  
    0.595
Mnod_2531
KEGG: rsq:Rsph17025_2418 hypothetical protein.
  
     0.573
Mnod_3831
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: mlo:mll8500 repressor protein C; Belongs to the peptidase S24 family.
 
    0.558
Mnod_7333
TIGRFAM: phage terminase, small subunit, P27 family; KEGG: ppu:PP_3882 phage terminase, small subunit, putative.
  
     0.551
Mnod_0570
PFAM: late control D family protein; KEGG: met:M446_4124 late control D family protein.
  
  
 0.548
Mnod_4349
KEGG: mrd:Mrad2831_6536 hypothetical protein.
       0.527
Mnod_0863
PFAM: glycoside hydrolase family 16; KEGG: bbt:BBta_1039 hypothetical protein.
  
   
 0.518
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.