Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_4371PFAM: peptidase S49; KEGG: met:M446_2757 peptidase S49. (287 aa)    
Predicted Functional Partners:
Mnod_3861
PFAM: peptidase S49; KEGG: rsq:Rsph17025_1752 peptidase S49.
  
     0.759
glyQ
TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit; KEGG: met:M446_2758 glycyl-tRNA synthetase, alpha subunit.
 
     0.653
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
 
      0.632
Mnod_6120
Protease; KEGG: cyt:cce_0593 protease.
 
   
 0.537
glyS
TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: met:M446_2759 glycyl-tRNA synthetase, beta subunit.
 
     0.526
Mnod_4372
KEGG: met:M446_2756 hypothetical protein.
       0.404
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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