STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_4381PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_2746 short-chain dehydrogenase/reductase SDR. (254 aa)    
Predicted Functional Partners:
Mnod_4383
PFAM: Transketolase central region; Transketolase domain protein; KEGG: met:M446_2744 transketolase central region.
 
     0.950
Mnod_4382
PFAM: Transketolase domain protein; KEGG: met:M446_2745 transketolase domain-containing protein.
 
     0.945
Mnod_4384
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: met:M446_2743 3-hydroxyisobutyrate dehydrogenase.
       0.842
Mnod_4386
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_2741 TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 
  0.611
Mnod_4385
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: met:M446_2742 TRAP dicarboxylate transporter, DctP subunit.
       0.600
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.510
Mnod_3157
KEGG: met:M446_6851 acyl transferase domain-containing protein.
 
 
 0.449
Mnod_3359
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: xau:Xaut_0907 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.
  
 0.422
Mnod_2222
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mrd:Mrad2831_5866 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.412
Mnod_4387
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: met:M446_2740 transketolase; Belongs to the transketolase family.
  
  
 0.407
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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